Ancient DNA reveals traces of Iberian Neolithic and Bronze Age lineages in modern Iberian horses

Multiple geographical regions have been proposed for the domestication of Equus caballus . It has been suggested, based on zooarchaeological and genetic analyses that wild horses from the Iberian Peninsula were involved in the process, and the overrepresentation of mitochondrial D1 cluster in modern Iberian horses supports this suggestion. To test this hypothesis, we analysed mitochondrial DNA from 22 ancient Iberian horse remains belonging to the Neolithic, the Bronze Age and the Middle Ages, against previously published sequences. Only the medieval Iberian sequence appeared in the D1 group. Neolithic and Bronze Age sequences grouped in other clusters, one of which (Lusitano group C) is exclusively represented by modern horses of Iberian origin. Moreover, Bronze Age Iberian sequences displayed the lowest nucleotide diversity values when compared with modern horses, ancient wild horses and other ancient domesticates using nonparametric bootstrapping analyses. We conclude that the excessive clustering of Bronze Age horses in the Lusitano group C, the observed nucleotide diversity and the local continuity from wild Neolithic Iberian to modern Iberian horses, could be explained by the use of local wild mares during an early Iberian domestication or restocking event, whereas the D1 group probably was introduced into Iberia in later historical times.     

Concordant phylogeography and cryptic speciation in two Western Palaearctic oak gall parasitoid species complexes

Little is known about the evolutionary history of most complex multi‐trophic insect communities. Widespread species from different trophic levels might evolve in parallel, showing similar spatial patterns and either congruent temporal patterns (Contemporary Host‐tracking) or later divergence in higher trophic levels (Delayed Host‐tracking). Alternatively, host shifts by natural enemies among communities centred on different host resources could disrupt any common community phylogeographic pattern. We examined these alternative models using two Megastigmus parasitoid morphospecies associated with oak cynipid galls sampled throughout their Western Palaearctic distributions. Based on existing host cynipid data, a parallel evolution model predicts that eastern regions of the Western Palaearctic should contain ancestral populations with range expansions across Europe about 1.6 million years ago and deeper species‐level divergence at both 8–9 and 4–5 million years ago. Sequence data from mitochondrial cytochrome b and multiple nuclear genes showed similar phylogenetic patterns and revealed cryptic genetic species within both morphospecies, indicating greater diversity in these communities than previously thought. Phylogeographic divergence was apparent in most cryptic species between relatively stable, diverse, putatively ancestral populations in Asia Minor and the Middle East, and genetically depauperate, rapidly expanding populations in Europe, paralleling patterns in host gallwasp species. Mitochondrial and nuclear data also suggested that Europe may have been colonized multiple times from eastern source populations since the late Miocene. Temporal patterns of lineage divergence were congruent within and across trophic levels, supporting the Contemporary Host‐tracking Hypothesis for community evolution.     

Ligands of boron in Pisum sativum nodules are involved in regulation of oxygen concentration and rhizobial infection

Boron (B) is an essential nutrient for N₂‐fixing legume–rhizobia symbioses, and the capacity of borate ions to bind and stabilize biomolecules is the basis of any B function. We used a borate‐binding‐specific resin and immunostaining techniques to identify B ligands important for the development of Pisum sativum–Rhizobium leguminosarum 3841 symbiotic nodules. arabinogalactan–extensin (AGPE), recognized by MAC 265 antibody, appeared heavily bound to the resin in extracts derived from B‐sufficient, but not from B‐deficient nodules. MAC 265 stained the infection threads and the extracellular matrix of cortical cells involved in the oxygen diffusion barrier. In B‐deprived nodules, immunolocalization of MAC 265 antigens was significantly reduced. Leghaemoglobin (Lb) concentration largely decreased in B‐deficient nodules. The absence of MAC 203 antigens in B‐deficient nodules suggests a high internal oxygen concentration, as this antibody detects an epitope on the lipopolysaccharide (LPS) of bacteroids typically expressed in micro‐aerobically grown R. leguminosarum 3841. However, B‐deprived nodules did not accumulate oxidized lipids and proteins, and revealed a decrease in the activity of the major antioxidant enzyme ascorbate peroxidase (APX). Therefore, B deficiency reduced the stability of nodule macromolecules important for rhizobial infection, and for regulation of oxygen concentration, resulting in non‐functional nodules, but did not appear to induce oxidative damage in low‐B nodules.     

A well‐preserved ‘charadriiform‐like’ fossil bird from the Early Eocene Fur Formation of Denmark

Abstract: We describe a new, exceptionally well‐preserved fossil bird recovered from marine deposits of the Early Eocene Fur Formation of Denmark. Morsoravis sedilis gen. et sp. nov. is known by a single specimen that consists of a three‐dimensional skull, vertebral column, ribs, pelvis, and left hindlimb and associated parts of the right hindlimb. Comparisons based on overall morphology and particularly characters of the skull, vertebrae and pelvis indicate that the new specimen is morphologically similar to charadriiform birds (the shorebirds and relatives). This similarity is also expressed by a phylogenetic analysis of higher neornithine (modern birds) taxa, which supports a close relationship between the new fossil and modern charadriiforms. The morphology of the hindlimbs, in particular, shows that the new fossil corresponds to a new taxon that is distinguishable from modern charadriiform clades. One interesting aspect of its morphology is the presence of hindlimb specializations that are most commonly found among perching birds – these suggest that ecologically the new Danish fossil bird may have differed from the wading habits typical of most charadriiforms.     

Skolithos pipe rock and associated ichnofabrics from the southern Rocky Mountains,Canada: colonization trends and environmental controls in an early Cambrian sand‐sheet complex

Desjardins, P.R., Mángano, M.G., Buatois, L.A. & Pratt, B.R. 2010: Skolithos pipe rock and associated ichnofabrics from the southern Rocky Mountains, Canada: colonization trends and environmental controls in an early Cambrian sand‐sheet complex. Lethaia, 10.1111/j.1502‐3931.2009.00214.x The Lower Cambrian Gog Group of the southern Rocky Mountains of western Canada offers an opportunity to explore animal–sediment relationships in a high‐energy setting, during the early phase of Phanerozoic diversification. Its strata record a sand‐sheet complex on the broad pericontinental shelf of West Laurentia. Six ichnofabrics are recognized: Skolithos IF‐1 characterized by Skolithos linearis in planar cross‐stratified sandstone; Skolithos IF‐2 with Skolithos linearis and accessory Diplocraterion parallelum in ripple cross‐laminated, and planar and trough cross‐stratified sandstone; Skolithos IF‐3 with S. linearis and Planolites montanus in wavy‐ and flaser‐bedded sandstone, interfingering with bioturbated mudstone exhibiting P. montanus and Teichichnus rectus; Skolithos IF‐4, characterized by abundant Skolithos linearis in planar and trough cross‐stratified sandstone; Rosselia IF‐1 consisting of Rosselia isp. in planar cross‐stratified sandstone; and Rosselia IF‐2 consisting of scattered small Rosselia isp. in hummocky, cross‐stratified sandstone. The presence of contrasting ichnofabrics within a single early Cambrian sand‐sheet complex illuminates how the colonization trends of suspension and detritus feeders were controlled by factors specific to the various sub‐environments. □Gog Group, Ichnofabric, Lower Cambrian, Pipe Rock, Rosselia, Skolithos.     

Untangling associations between chironomid taxa in Neotropical streams using local and landscape filters

1. Analyses of species association have major implications for selecting indicators for freshwater biomonitoring and conservation, because they allow for the elimination of redundant information and focus on taxa that can be easily handled and identified. These analyses are particularly relevant in the debate about using speciose groups (such as the Chironomidae) as indicators in the tropics, because they require difficult and time‐consuming analysis, and their responses to environmental gradients, including anthropogenic stressors, are poorly known. 2. Our objective was to show whether chironomid assemblages in Neotropical streams include clear associations of taxa and, if so, how well these associations could be explained by a set of models containing information from different spatial scales. For this, we formulated a priori models that allowed for the influence of local, landscape and spatial factors on chironomid taxon associations (CTA). These models represented biological hypotheses capable of explaining associations between chironomid taxa. For instance, CTA could be best explained by local variables (e.g. pH, conductivity and water temperature) or by processes acting at wider landscape scales (e.g. percentage of forest cover). 3. Biological data were taken from 61 streams in Southeastern Brazil, 47 of which were in well‐preserved regions, and 14 of which drained areas severely affected by anthropogenic activities. We adopted a model selection procedure using Akaike’s information criterion to determine the most parsimonious models for explaining CTA. 4. Applying Kendall’s coefficient of concordance, seven genera (Tanytarsus/Caladomyia, Ablabesmyia, Parametriocnemus, Pentaneura, Nanocladius, Polypedilum and Rheotanytarsus) were identified as associated taxa. The best‐supported model explained 42.6% of the total variance in the abundance of associated taxa. This model combined local and landscape environmental filters and spatial variables (which were derived from eigenfunction analysis). However, the model with local filters and spatial variables also had a good chance of being selected as the best model. 5. Standardised partial regression coefficients of local and landscape filters, including spatial variables, derived from model averaging allowed an estimation of which variables were best correlated with the abundance of associated taxa. In general, the abundance of the associated genera tended to be lower in streams characterised by a high percentage of forest cover (landscape scale), lower proportion of muddy substrata and high values of pH and conductivity (local scale). 6. Overall, our main result adds to the increasing number of studies that have indicated the importance of local and landscape variables, as well as the spatial relationships among sampling sites, for explaining aquatic insect community patterns in streams. Furthermore, our findings open new possibilities for the elimination of redundant data in the assessment of anthropogenic impacts on tropical streams.     

Behavioural flexibility does not prevent numerical declines of harvester ants under intense livestock grazing

1. Human‐induced rapid environmental change may decrease food resources and create unfavourable conditions for native species. Organisms showing a flexible foraging behaviour can exploit novel or alternative foods and are more likely to persist, whereas less flexible organisms might suffer starvation and numerical reductions. 2. This study assessed whether declines in the quality and availability of seeds prompted by grazing provoke behavioural and numerical responses in Pogonomyrmex mendozanus ants, and aimed to test whether behavioural flexibility buffers habitat degradation and prevents numerical declines. 3. Heavy grazing caused seed reductions, especially of the highly consumed and preferred grass seeds, and triggered two kinds of ant responses. Ants expanded their diet by incorporating a greater proportion of non‐seed items, and they reduced foraging activity. As a consequence, the rate of food intake per colony lessened, particularly that of carbohydrate‐rich seeds like grass seeds. Colony density under heavy grazing also fell. 4. Habitat degradation triggered a cascade of mechanisms that starts with a decrease in the seed resources and continues with changes in ant behaviour. However, behavioural responses were insufficient to prevent ant numerical declines. The results of this study suggest that the reduction in the colony density under habitat degradation was provoked by ant nutritional deficit and starvation, and predict a deterioration in body condition, colony performance and reproduction of ants, which deserve further assessment.     

Differential effects of anthropogenic edges and gaps on the reproduction of a forest‐dwelling plant: The role of plant reproductive effort and nectar robbing by bumblebees

Forest fragmentation produces sharp changes in the spatial configuration of remnant forest patches, which include the increasing influence of patch edges on the interior of forest patches (‘edge effects’). Human activities responsible for forest fragmentation tend also to change the internal characteristics of remnant patches, for example, through the creation of gaps by selective logging. While edges and gaps can be expected to cause comparable changes in the micro‐environmental conditions of the forest, their effects on forest‐dwelling species and their interactions are not necessarily comparable. This study compares the effect of forest edges and anthropogenic gaps on the reproductive success of a self‐incompatible epiphytic plant (Mitraria coccinea), mediated by changes in its relationship with mutualists (pollinators) and antagonists (flower larcenists). Mitraria coccinea's flowers are pollinated by hummingbirds and robbed by the bumblebee Bombus dahlbomii. Edges and gaps had comparable positive effects on flower production and fruit set; however, nectar robbing was up to sevenfold higher in patches with numerous gaps and resulted in lower reproductive success (fruit set and total fruit crop). Forest fragmentation studies should therefore avoid treating forest remnants as homogeneous units (i.e. focusing exclusively on their characteristics and connectivity), without taking into account the internal heterogeneity caused by anthropogenic pressures (e.g. gaps and edge effects).